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docs: revise thesis narrative, diagrams, and build layout

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2026-09-08 03:56:15 +07:00 Verified
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# Thesis Evidence Index
The claim-to-evidence map now lives inline in
[`system-design-implementation.md`](system-design-implementation.md), Appendix B:
[`system-design-implementation.md`](system-design-implementation.md), Appendix A:
Evidence Index.
This file remains as a stable pointer for older roadmap and project-map links.
For the external-agent challenge evaluation workflow, including trial profiles,
manual audits, and report interpretation, see
The earlier CLI campaign is retired from the active thesis. Its preserved
text and supporting data are indexed in the
[historical evaluation](../historical/thesis/2026-09-07-retired-agent-evaluation.md).
No replacement shell-backed agent results are claimed yet.
For the retained challenge harness, including trial profiles, manual audits,
and report interpretation, see
[`../runbooks/agent-challenge-evaluation.md`](../runbooks/agent-challenge-evaluation.md).
The primary checked cohort and generated aggregate are
The historical cohort and generated aggregate remain at
[`agent-challenge-cohort.json`](agent-challenge-cohort.json) and
[`agent-challenge-results.md`](agent-challenge-results.md).