docs: publish thesis evaluation bundle

docs/thesis/include-markdown.lua

@@ -0,0 +1,32 @@
+-- Replace explicit include markers with parsed Markdown before cross-reference processing.
+local agent_results_path = nil
+
+local function read_metadata(meta)
+  if meta.thesisAgentResults then
+    agent_results_path = pandoc.utils.stringify(meta.thesisAgentResults)
+  end
+  return meta
+end
+
+local function include_results(div)
+  if div.identifier ~= "include-agent-challenge-results" then
+    return nil
+  end
+  if not agent_results_path or agent_results_path == "" then
+    error("thesisAgentResults metadata is required for the evaluation include")
+  end
+
+  local file, open_error = io.open(agent_results_path, "r")
+  if not file then
+    error("cannot open agent challenge results: " .. tostring(open_error))
+  end
+  local content = file:read("*a")
+  file:close()
+  return pandoc.read(content, "markdown").blocks
+end
+
+-- Separate passes guarantee metadata is available before block traversal.
+return {
+  { Meta = read_metadata },
+  { Div = include_results },
+}