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//! # Generalized Levenshtein Distance
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//! This is a simple generalized Levenshtein Distance implementation.
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/// costs for different edit operations
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///
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/// each with the letters involved: so you can further tweak the cost in ur own [`CustomCost`]s impl
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/// position? idk
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#[derive(Debug, Clone, PartialEq)]
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pub enum EditOperation<T>{
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Insert { elem: T }, // Insert a character from the target string
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Delete { elem: T }, // Delete a character from the source string
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Substitute { from: T, to: T }, // Replace one character with another
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Match { elem: T }, // Characters match, no operation
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}
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pub struct EditCost {
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pub insert: i32,
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pub delete: i32,
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pub substitute: i32,
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}
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impl Default for EditCost {
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fn default() -> Self {
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EditCost {
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insert: 1,
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delete: 1,
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substitute: 1,
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}
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}
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}
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impl EditCost {
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pub fn new(insert: i32, delete: i32, substitute: i32) -> Self {
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EditCost {
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insert,
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delete,
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substitute,
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}
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}
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}
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/// custom cost for each [`EditOperation`]s operation
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pub trait CustomCost<T> {
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fn cost(&self, operation: &EditOperation<T>) -> i32;
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}
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impl<T> CustomCost<T> for EditCost {
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fn cost(&self, operation: &EditOperation<T>) -> i32 {
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match operation {
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EditOperation::Insert { .. } => self.insert,
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EditOperation::Delete { .. } => self.delete,
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EditOperation::Substitute { .. } => self.substitute,
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EditOperation::Match { .. } => 0,
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}
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}
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}
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/// cost of operation and the operation itself
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#[derive(Debug, Clone)]
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pub struct CostOperation<T> {
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pub cost: i32,
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pub operation: Option<EditOperation<T>>,
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}
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// absolutely phenomenal naming
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use std::fmt::{Debug, Display};
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impl<T: Debug> Display for EditOperation<T> {
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fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result {
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match self {
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EditOperation::Insert { elem } => write!(f, "Insert {:#?}", elem),
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EditOperation::Delete { elem } => write!(f, "Delete {:#?}", elem),
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EditOperation::Substitute { from, to } => {
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write!(f, "Substitute {:#?} with {:#?}", from, to)
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}
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EditOperation::Match { elem } => write!(f, "Match {:#?}", elem),
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}
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}
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}
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impl<T: Debug> Display for CostOperation<T> {
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fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result {
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write!(f, "Cost: {}, Operation: {:#?}", self.cost, self.operation)
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}
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}
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/// returns the distance + the dp table for who needs it
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///
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/// this the slow version yes
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pub fn generalized_levenshtein<T, F>(
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seq1: &[T],
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seq2: &[T],
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cost_calc: &F,
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) -> (i32, Vec<Vec<CostOperation<T>>>)
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where
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T: PartialEq + Clone + Debug,
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F: CustomCost<T>,
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{
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let len1 = seq1.len();
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let len2 = seq2.len();
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let mut dp = vec![
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vec![
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CostOperation {
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cost: 0,
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operation: None
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};
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len2 + 1
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];
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len1 + 1
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];
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// Fill the base cases
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for i in 0..=len1 {
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dp[i][0] = CostOperation {
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cost: i as i32,
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operation: if i > 0 {
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Some(EditOperation::Delete {
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elem: seq1[i - 1].clone(),
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})
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} else {
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None
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},
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};
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}
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for j in 0..=len2 {
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dp[0][j] = CostOperation {
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cost: j as i32,
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operation: if j > 0 {
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Some(EditOperation::Insert {
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elem: seq2[j - 1].clone(),
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})
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} else {
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None
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},
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};
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}
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// Fill the DP table
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for i in 1..=len1 {
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for j in 1..=len2 {
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let cost = seq1[i - 1] == seq2[j - 1];
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let delete_op = EditOperation::Delete {
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elem: seq1[i - 1].clone(),
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};
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let insert_op = EditOperation::Insert {
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elem: seq2[j - 1].clone(),
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};
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let sub_op = if cost {
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EditOperation::Match {
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elem: seq1[i - 1].clone(),
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}
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} else {
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EditOperation::Substitute {
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from: seq1[i - 1].clone(),
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to: seq2[j - 1].clone(),
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}
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};
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let delete = CostOperation {
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cost: dp[i - 1][j].cost + cost_calc.cost(&delete_op),
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operation: Some(delete_op),
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};
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let insert = CostOperation {
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cost: dp[i][j - 1].cost + cost_calc.cost(&insert_op),
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operation: Some(insert_op),
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};
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let substitute = CostOperation {
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cost: dp[i - 1][j - 1].cost + cost_calc.cost(&sub_op),
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operation: Some(sub_op),
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};
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dp[i][j] = [delete, insert, substitute]
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.into_iter()
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.min_by_key(|x| x.cost)
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.unwrap();
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}
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}
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(dp[len1][len2].cost, dp)
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}
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///extract the optimized edit sequence from the dp table
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///
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/// strs there just for the len() lmfao
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pub fn edit_sequence<T: Clone>(dp: &[Vec<CostOperation<T>>]) -> Vec<EditOperation<T>> {
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let mut i = dp.len() - 1;
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let mut j = dp[0].len() - 1;
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let mut funny = vec![];
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while i > 0 || j > 0 {
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if let Some(operation) = &dp[i][j].operation {
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match operation {
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EditOperation::Insert { .. } => {
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funny.push(operation.clone());
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j -= 1;
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}
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EditOperation::Delete { .. } => {
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funny.push(operation.clone());
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i -= 1;
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}
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EditOperation::Substitute { .. } | EditOperation::Match { .. } => {
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funny.push(operation.clone());
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i -= 1;
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j -= 1;
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}
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}
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}
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}
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funny.reverse();
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funny
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}
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/// alignment
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/// is ass dont use
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pub fn generate_alignment<T: Clone + Debug>(
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operations: &[Vec<CostOperation<T>>],
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) -> (Vec<T>, Vec<T>) {
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let mut aligned_seq1 = Vec::new();
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let mut aligned_seq2 = Vec::new();
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let mut i = operations.len() - 1;
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let mut j = operations[0].len() - 1;
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while i > 0 || j > 0 {
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let op = &operations[i][j];
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match op.operation {
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Some(EditOperation::Insert { ref elem }) => {
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aligned_seq1.push(None);
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aligned_seq2.push(Some(elem.clone()));
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j -= 1;
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}
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Some(EditOperation::Delete { ref elem }) => {
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aligned_seq1.push(Some(elem.clone()));
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aligned_seq2.push(None);
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i -= 1;
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}
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Some(EditOperation::Substitute { ref from, ref to }) => {
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aligned_seq1.push(Some(from.clone()));
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aligned_seq2.push(Some(to.clone()));
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i -= 1;
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j -= 1;
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}
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Some(EditOperation::Match { ref elem }) => {
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aligned_seq1.push(Some(elem.clone()));
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aligned_seq2.push(Some(elem.clone()));
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i -= 1;
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j -= 1;
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}
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None => break,
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}
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}
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aligned_seq1.reverse();
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aligned_seq2.reverse();
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(aligned_seq1.into_iter().filter_map(|x| x).collect(), aligned_seq2.into_iter().filter_map(|x| x).collect())
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}
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/// calculate distance, also get u the [`edit_sequence`]
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/// use this one
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///
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/// what this does is call this ass [`levenshtein_with_operations`] and then the [`edit_sequence`] from the generated dp table
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pub fn levenstein_distance<T: PartialEq + Clone + Debug>(
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seq1: &[T],
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seq2: &[T],
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cost: &impl CustomCost<T>,
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) -> (i32, Vec<EditOperation<T>>) {
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let (c, d) = generalized_levenshtein(seq1, seq2, cost);
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(c, edit_sequence(&d))
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}
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/// get source str from [`edit_sequence`]
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pub fn reconstruct_from<T: Clone>(vector: &Vec<EditOperation<T>>) -> Vec<T> {
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let mut result = Vec::new();
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for operation in vector {
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match operation {
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EditOperation::Insert { .. } => {}
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EditOperation::Delete { elem } => {
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result.push(elem.clone());
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}
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EditOperation::Substitute { from, .. } => {
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result.push(from.clone());
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}
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EditOperation::Match { elem } => {
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result.push(elem.clone());
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}
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}
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}
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result
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}
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/// get changed str from [`edit_sequence`]
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pub fn reconstruct_to<T: Clone>(vector: &Vec<EditOperation<T>>) -> Vec<T> {
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let mut result = Vec::new();
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for operation in vector {
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match operation {
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EditOperation::Insert { elem } => {
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result.push(elem.clone());
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}
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EditOperation::Delete { .. } => {}
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EditOperation::Substitute { to, .. } => {
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result.push(to.clone());
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}
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EditOperation::Match { elem } => {
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result.push(elem.clone());
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}
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}
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}
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result
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}
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+27
-21
@@ -1,5 +1,7 @@
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//! # Levenshtein Distance
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//! # Levenshtein Distance
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//! This is a simple implementation of the Levenshtein distance algorithm with operations.
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//! This is a simple implementation of the Levenshtein distance algorithm with operations.
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//!
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pub mod general;
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/// costs for different edit operations
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/// costs for different edit operations
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///
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///
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@@ -90,8 +92,10 @@ pub fn levenshtein_with_operations(
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str2: &str,
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str2: &str,
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cost_calc: &impl CustomCost,
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cost_calc: &impl CustomCost,
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) -> (i32, Vec<Vec<CostOperation>>) {
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) -> (i32, Vec<Vec<CostOperation>>) {
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let len1 = str1.len();
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let chars1: Vec<char> = str1.chars().collect();
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let len2 = str2.len();
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let chars2: Vec<char> = str2.chars().collect();
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let len1: usize = chars1.len();
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let len2 = chars2.len();
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let mut dp = vec![
|
let mut dp = vec![
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vec![
|
vec![
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CostOperation {
|
CostOperation {
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@@ -102,11 +106,15 @@ pub fn levenshtein_with_operations(
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];
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];
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len1 + 1
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len1 + 1
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];
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];
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// println!("len1: {}, len2: {}", str1.len(), str2.len());
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let chars1: Vec<char> = str1.chars().collect();
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// println!("len char1: {}, len char2: {}", chars1.len(), chars2.len());
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let chars2: Vec<char> = str2.chars().collect();
|
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// Fill the base cases
|
// Fill the base cases
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for i in 0..=len1 {
|
for i in 0..=len1 {
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// if i > 3068 && i < 3075 {
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// println!("len1: {}, len2: {}", str1.len(), str2.len());
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// println!("len char1: {}, len char2: {}", chars1.len(), chars2.len());
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// println!("i: {}, char: {:#?}", i, chars1[i - 1]);
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// }
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dp[i][0] = CostOperation {
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dp[i][0] = CostOperation {
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cost: i as i32,
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cost: i as i32,
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operation: if i > 0 {
|
operation: if i > 0 {
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@@ -178,9 +186,9 @@ pub fn levenshtein_with_operations(
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///extract the optimized edit sequence from the dp table
|
///extract the optimized edit sequence from the dp table
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///
|
///
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/// strs there just for the len() lmfao
|
/// strs there just for the len() lmfao
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pub fn edit_sequence(dp: &[Vec<CostOperation>], str1: &str, str2: &str) -> Vec<EditOperation> {
|
pub fn edit_sequence(dp: &[Vec<CostOperation>]) -> Vec<EditOperation> {
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let mut i = str1.len();
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let mut i = dp.len() - 1;
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let mut j = str2.len();
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let mut j = dp[0].len() - 1; // guaranteed
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let mut funny = vec![];
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let mut funny = vec![];
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|
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while i > 0 || j > 0 {
|
while i > 0 || j > 0 {
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@@ -214,15 +222,13 @@ pub fn edit_sequence(dp: &[Vec<CostOperation>], str1: &str, str2: &str) -> Vec<E
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/// alignment
|
/// alignment
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/// is ass dont use
|
/// is ass dont use
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pub fn generate_alignment(
|
pub fn generate_alignment(
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str1: &str,
|
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str2: &str,
|
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operations: &[Vec<CostOperation>],
|
operations: &[Vec<CostOperation>],
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) -> (String, String) {
|
) -> (String, String) {
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let mut aligned_str1 = String::new();
|
let mut aligned_str1 = String::new();
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let mut aligned_str2 = String::new();
|
let mut aligned_str2 = String::new();
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|
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let mut i = str1.len();
|
let mut i = operations.len() - 1;
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let mut j = str2.len();
|
let mut j = operations[0].len() - 1;
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|
|
||||||
while i > 0 || j > 0 {
|
while i > 0 || j > 0 {
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let op = &operations[i][j];
|
let op = &operations[i][j];
|
||||||
@@ -266,7 +272,7 @@ pub fn generate_alignment(
|
|||||||
/// what this does is call this ass [`levenshtein_with_operations`] and then the [`edit_sequence`] from the generated dp table
|
/// what this does is call this ass [`levenshtein_with_operations`] and then the [`edit_sequence`] from the generated dp table
|
||||||
pub fn levenstein_distance(str1: &str, str2: &str, cost: &EditCost) -> (i32, Vec<EditOperation>) {
|
pub fn levenstein_distance(str1: &str, str2: &str, cost: &EditCost) -> (i32, Vec<EditOperation>) {
|
||||||
let (c, d) = levenshtein_with_operations(str1, str2, cost);
|
let (c, d) = levenshtein_with_operations(str1, str2, cost);
|
||||||
(c, edit_sequence(&d, str1, str2))
|
(c, edit_sequence(&d))
|
||||||
}
|
}
|
||||||
|
|
||||||
/// get source str from [`edit_sequence`]
|
/// get source str from [`edit_sequence`]
|
||||||
@@ -413,7 +419,7 @@ mod tests {
|
|||||||
let str1 = "kitten";
|
let str1 = "kitten";
|
||||||
let str2 = "sitting";
|
let str2 = "sitting";
|
||||||
let (distance, operations) = levenshtein_with_operations(str1, str2, &cost);
|
let (distance, operations) = levenshtein_with_operations(str1, str2, &cost);
|
||||||
let operation = edit_sequence(&operations, str1, str2);
|
let operation = edit_sequence(&operations);
|
||||||
assert_eq!(distance, 3);
|
assert_eq!(distance, 3);
|
||||||
assert_eq!(
|
assert_eq!(
|
||||||
operation,
|
operation,
|
||||||
@@ -428,7 +434,7 @@ mod tests {
|
|||||||
]
|
]
|
||||||
);
|
);
|
||||||
|
|
||||||
let (aligned_str1, aligned_str2) = generate_alignment(str1, str2, &operations);
|
let (aligned_str1, aligned_str2) = generate_alignment(&operations);
|
||||||
assert_eq!(aligned_str1, "kitten-");
|
assert_eq!(aligned_str1, "kitten-");
|
||||||
assert_eq!(aligned_str2, "sitting");
|
assert_eq!(aligned_str2, "sitting");
|
||||||
}
|
}
|
||||||
@@ -438,7 +444,7 @@ mod tests {
|
|||||||
let cost = EditCost::default();
|
let cost = EditCost::default();
|
||||||
let (str1, str2) = ("flaw", "lawn");
|
let (str1, str2) = ("flaw", "lawn");
|
||||||
let (distance, operations) = levenshtein_with_operations(str1, str2, &cost);
|
let (distance, operations) = levenshtein_with_operations(str1, str2, &cost);
|
||||||
let operation = edit_sequence(&operations, str1, str2);
|
let operation = edit_sequence(&operations);
|
||||||
assert_eq!(distance, 2);
|
assert_eq!(distance, 2);
|
||||||
assert_eq!(
|
assert_eq!(
|
||||||
operation,
|
operation,
|
||||||
@@ -451,7 +457,7 @@ mod tests {
|
|||||||
]
|
]
|
||||||
);
|
);
|
||||||
|
|
||||||
let (aligned_str1, aligned_str2) = generate_alignment("flaw", "lawn", &operations);
|
let (aligned_str1, aligned_str2) = generate_alignment(&operations);
|
||||||
assert_eq!(aligned_str1, "flaw-");
|
assert_eq!(aligned_str1, "flaw-");
|
||||||
assert_eq!(aligned_str2, "-lawn");
|
assert_eq!(aligned_str2, "-lawn");
|
||||||
}
|
}
|
||||||
@@ -461,7 +467,7 @@ mod tests {
|
|||||||
let cost = EditCost::default();
|
let cost = EditCost::default();
|
||||||
let (str1, str2) = ("gumbo", "gambol");
|
let (str1, str2) = ("gumbo", "gambol");
|
||||||
let (distance, operations) = levenshtein_with_operations(str1, str2, &cost);
|
let (distance, operations) = levenshtein_with_operations(str1, str2, &cost);
|
||||||
let operation = edit_sequence(&operations, str1, str2);
|
let operation = edit_sequence(&operations);
|
||||||
assert_eq!(distance, 2);
|
assert_eq!(distance, 2);
|
||||||
assert_eq!(
|
assert_eq!(
|
||||||
operation,
|
operation,
|
||||||
@@ -475,7 +481,7 @@ mod tests {
|
|||||||
]
|
]
|
||||||
);
|
);
|
||||||
|
|
||||||
let (aligned_str1, aligned_str2) = generate_alignment("gumbo", "gambol", &operations);
|
let (aligned_str1, aligned_str2) = generate_alignment(&operations);
|
||||||
assert_eq!(aligned_str1, "gumbo-");
|
assert_eq!(aligned_str1, "gumbo-");
|
||||||
assert_eq!(aligned_str2, "gambol");
|
assert_eq!(aligned_str2, "gambol");
|
||||||
}
|
}
|
||||||
@@ -485,7 +491,7 @@ mod tests {
|
|||||||
let cost = EditCost::default();
|
let cost = EditCost::default();
|
||||||
let (str1, str2) = ("test", "test");
|
let (str1, str2) = ("test", "test");
|
||||||
let (distance, operations) = levenshtein_with_operations(str1, str2, &cost);
|
let (distance, operations) = levenshtein_with_operations(str1, str2, &cost);
|
||||||
let operation = edit_sequence(&operations, str1, str2);
|
let operation = edit_sequence(&operations);
|
||||||
assert_eq!(distance, 0);
|
assert_eq!(distance, 0);
|
||||||
assert_eq!(
|
assert_eq!(
|
||||||
operation,
|
operation,
|
||||||
@@ -497,7 +503,7 @@ mod tests {
|
|||||||
]
|
]
|
||||||
);
|
);
|
||||||
|
|
||||||
let (aligned_str1, aligned_str2) = generate_alignment("test", "test", &operations);
|
let (aligned_str1, aligned_str2) = generate_alignment(&operations);
|
||||||
assert_eq!(aligned_str1, "test");
|
assert_eq!(aligned_str1, "test");
|
||||||
assert_eq!(aligned_str2, "test");
|
assert_eq!(aligned_str2, "test");
|
||||||
}
|
}
|
||||||
|
|||||||
+1
-1
@@ -20,6 +20,6 @@ fn main() {
|
|||||||
|
|
||||||
let (d2, dp) = levenshtein_with_operations(str1, str2, &EditCost::default());
|
let (d2, dp) = levenshtein_with_operations(str1, str2, &EditCost::default());
|
||||||
assert!(d2 == distance);
|
assert!(d2 == distance);
|
||||||
let (al1, al2) = generate_alignment(str1, str2, &dp);
|
let (al1, al2) = generate_alignment( &dp);
|
||||||
println!("Alignment:\n{:#?}\n{:#?}", al1, al2);
|
println!("Alignment:\n{:#?}\n{:#?}", al1, al2);
|
||||||
}
|
}
|
||||||
Reference in new issue
Block a user